BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB020F10SP1|AL427656
(838 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1290 1596 0.0
>3x_Contig1290
Length = 6501
Score = 1596 bits (799), Expect = 0.0
Identities = 825/838 (98%), Gaps = 2/838 (0%)
Strand = Plus / Minus
Query: 1 aacggcttcttgcactttgttgtccggcctttttggmagcggaggtctgtctccttctct 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1865 aacggcttcttgcactttgttgtccggcctttttggaagcggaggtctgtctccttctct 1806
Query: 61 tratcttggtctactgctggcagatgaggcagaacggtttcttctggacccggacgcaga 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1805 tgatcttggtctactgctggcagatgaggcagaacggtttcttctggacccggacgcaga 1746
Query: 121 tgatgggcgggatgacttgtagtccaattgtgacgaatcatcctctagattganatcttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1745 tgatgggcgggatgacttgtagtccaattgtgacgaatcatcctctagattgaaatcttc 1686
Query: 181 caccttgacagcggtatgtctgavcttaccctttaawtatttwtccctgataaacatttc 240
||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||
Sbjct: 1685 caccttgacagcggtatgtctgaacttaccctttaaatatttatccctgataaacatttc 1626
Query: 241 aacggcagtmcgatcctcgtcaccgtcaaatgggaaaggttctttcttagggttccaaaa 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1625 aacggcagtacgatcctcgtcaccgtcaaatgggaaaggttctttcttagggttccaaaa 1566
Query: 301 actgctgttatgtttgtttcctccaagatcggcaacagtttgaacgtcacgcttagacca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1565 actgctgttatgtttgtttcctccaagatcggcaacagtttgaacgtcacgcttagacca 1506
Query: 361 tctatcaagagataaagatttcacgatactagtagcaccatcttctctgctgcctaacac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1505 tctatcaagagataaagatttcacgatactagtagcaccatcttctctgctgcctaacac 1446
Query: 421 tttcctatgtwcggwcagcacaccgacccgcacaagaatacacccaagttcactgaacag 480
|||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1445 tttcctatgtacgga-agcacaccga-ccgcacaagaatacacccaagttcactgaacag 1388
Query: 481 taggtagggaatggtgtcccacattcaccacatttatttgadttctcaccagcgttaagc 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1387 taggtagggaatggtgtcccacattcaccacatttatttgaattctcaccagcgttaagc 1328
Query: 541 aaaaactttaaatcatgttctacagattcacctcttgatcgtctcatttttggtttcctc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1327 aaaaactttaaatcatgttctacagattcacctcttgatcgtctcatttttggtttcctc 1268
Query: 601 gcttcagtatctcctcaataaaccttacctaaactcgactagtccaatttgggaccccta 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1267 gcttcagtatctcctcaataaaccttacctaaactcgactagtccaatttgggaccccta 1208
Query: 661 tttgatataaacgtaattctagcgttgggtctttataatcttataatatgaagtattttt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1207 tttgatataaacgtaattctagcgttgggtctttataatcttataatatgaagtattttt 1148
Query: 721 ttttattttcaatatccgttcttcactttcaccattttatgcttcgttcattcatagaac 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1147 ttttattttcaatatccgttcttcactttcaccattttatgcttcgttcattcatagaac 1088
Query: 781 ttctgttcctgttcggaatttcaaccgcatagaatatttcmagagctatttttgttca 838
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1087 ttctgttcctgttcggaatttcaaccgcatagaatatttcaagagctatttttgttca 1030
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.32
Gapped
Lambda K H
1.38 0.712 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6089
Number of Sequences: 1807
Number of extensions: 6089
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 838
length of database: 10,358,551
effective HSP length: 16
effective length of query: 822
effective length of database: 10,329,639
effective search space: 8490963258
effective search space used: 8490963258
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (30.0 bits)
S1: 12 (24.5 bits)
S2: 50 (100.4 bits)